GenBank Feature Extractor

Format Conversion

-Combine FASTA
-EMBL to FASTA
-EMBL Feature Extractor
-EMBL Trans Extractor
-Filter DNA
-Filter Protein
-GenBank to FASTA
-GenBank Feature Extractor
-GenBank Trans Extractor
-One to Three
-Range Extractor DNA
-Range Extractor Protein
-Reverse Complement
-Split Codons
-Split FASTA
-Three to One
-Window Extractor DNA
-Window Extractor Protein

Sequence Analysis

-Codon Plot
-Codon Usage
-CpG Islands
-DNA Molecular Weight
-DNA Pattern Find
-DNA Stats
-Fuzzy Search DNA
-Fuzzy Search Protein
-Ident and Sim
-Multi Rev Trans
-Mutate for Digest
-ORF Finder
-Pairwise Align Codons
-Pairwise Align DNA
-Pairwise Align Protein
-PCR Primer Stats
-PCR Products
-Protein GRAVY
-Protein Isoelectric Point
-Protein Molecular Weight
-Protein Pattern Find
-Protein Stats
-Restriction Digest
-Restriction Summary
-Reverse Translate
-Translate

Sequence Figures

-Color Align Conservation
-Color Align Properties
-Group DNA
-Group Protein
-Primer Map
-Restriction Map
-Translation Map

Random Sequences

-Mutate DNA
-Mutate Protein
-Random Coding DNA
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-Sample DNA
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Miscellaneous

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Sequence Manipulation Suite:

GenBank Feature Extractor

GenBank Feature Extractor accepts a GenBank file as input and reads the sequence feature information described in the feature table, according to the rules outlined in the GenBank release notes. The program extracts or highlights the relevant sequence segments and returns each sequence feature in FASTA format. GenBank Feature Extractor is particularly helpful when you wish to derive the sequence of a cDNA from a genomic sequence that contains many introns.

Paste the contents of one or more GenBank files into the text area below. Input limit is 1,000,000,000 characters.

LOCUS       AF177870     3123 bp    DNA             INV       31-OCT-1999
DEFINITION  Caenorhabditis remanei putative PP2C protein phosphatase FEM-2
            (fem-2) gene, complete cds.
ACCESSION   AF177870
NID         g6164828
VERSION     AF177870.1  GI:6164828
KEYWORDS    .
SOURCE      Caenorhabditis remanei.
  ORGANISM  Caenorhabditis remanei
            Eukaryota; Metazoa; Nematoda; Secernentea; Rhabditia; Rhabditida;
            Rhabditina; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis.
REFERENCE   1  (bases 1 to 3123)
  AUTHORS   Stothard,P.M., Hansen,D. and Pilgrim,D.
  TITLE     Isolation of PP2C sequences using degenerate-oligo PCR
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 3123)
  AUTHORS   Stothard,P.M., Hansen,D. and Pilgrim,D.
  TITLE     Direct Submission
  JOURNAL   Submitted (17-AUG-1999) Biological Sciences, University of Alberta,
            Edmonton, AB T6G-2E9, Canada
FEATURES             Location/Qualifiers
     source          1..3123
                     /organism="Caenorhabditis remanei"
                     /db_xref="taxon:31234"
     mRNA            join(<265..402,673..781,911..1007,1088..1215,
                     1377..1573,1866..2146,2306..2634,2683..>2855)
                     /gene="fem-2"
                     /product="putative FEM-2 protein phosphatase type 2C"
     gene            <265..>2855
                     /gene="fem-2"
     CDS             join(265..402,673..781,911..1007,1088..1215,1377..1573,
                     1866..2146,2306..2634,2683..2855)
                     /gene="fem-2"
                     /note="possible sex-determining protein"
                     /codon_start=1
                     /product="putative PP2C protein phosphatase FEM-2"
                     /protein_id="AAF04557.1"
                     /db_xref="PID:g6164829"
                     /db_xref="GI:6164829"
                     /translation="MSDSLNHPSSSTVHADDGFEPPTSPEDNNKKPSLEQIKQEREAL
                     FTDLFADRRRSARSVIEEAFQNELMSAEPVQPNVPNPHSIPIRFRHQPVAGPAHDVFG
                     DAVHSIFQKIMSRGVNADYSHWMSYWIALGIDKKTQMNYHMKPFCKDTYATEGSLEAK
                     QTFTDKIRSAVEEIIWKSAEYCDILSEKWTGIHVSADQLKGQRNKQEDRFVAYPNGQY
                     MNRGQSDISLLAVFDGHGGHECSQYAAAHFWEAWSDAQHHHSQDMKLDELLEKALETL
                     DERMTVRSVRESWKGGTTAVCCAVDLNTNQIAFAWLGDSPGYIMSNLEFRKFTTEHSP
                     SDPEECRRVEEVGGQIFVIGGELRVNGVLNLTRALGDVPGRPMISNKPDTLLKTIEPA
                     DYLVLLACDGISDVFNTSDLYNLVQAFVNEYDVEDYHELARYICNQAVSAGSADNVTV
                     VIGFLRPPEDVWRVMKTDSDDEESELEEEDDNE"
ORIGIN      
        1 gaacgcgaat gcctctctct ctttcgatgg gtatgccaat tgtccacatt cactcgtgtt
       61 gcctcctctt tgccaacacg caagacacca gaaacgcgtc aaccaaagag aaaaagacgc
      121 cgacaacggg cagcactcgc gagagacaaa ggttatcgcg ttgtgttatt atacattcgc
      181 atccgggtca actttagtcc gttgaacatg cttcttgaaa acctagttct cttaaaataa
      241 cgttttagaa gttttggtct tcagatgtct gattcgctaa atcatccatc gagttctacg
      301 gtgcatgcag atgatggatt cgagccacca acatctccgg aagacaacaa caaaaaaccg
      361 tctttagaac aaattaaaca ggaaagagaa gcgttgttta cggttagtta cctattagct
      421 gcaagttttg aaaaagcgga atctgtaaaa agcggaatct gtaaaaaaaa catctaagga
      481 ataattctga aaagaaaaag tttctaaatg ttaatcggaa tccaattttt atgaaattat
      541 ttaaaaaaaa actaaaatta gtttctaaaa aatttttcta aagtaattgg accatgtgaa
      601 ggtacaccca cttgttccaa tatgccatat ctaactgtaa aataatttga ttctcatgag
      661 aatatttttc aggatctatt cgcagatcgt cgacgaagcg ctcgttctgt gattgaagaa
      721 gctttccaaa acgaactcat gagtgctgaa ccagtccagc caaacgtgcc gaatccacat
      781 tgtgagttgg aaatttttat ttgataacca agagaaaaaa agttctacct ttttttcaaa
      841 aacctttcca aaaatgattc catctgatat aggattaaga aaaatatttt ccgaaatctc
      901 tgcttttcag cgattcccat tcgtttccgt catcaaccag ttgctggacc tgctcatgat
      961 gttttcggag acgcggtgca ttcaattttt caaaaaataa tgtccaggta tacactattt
     1021 ttgcatattt ttcttgccaa atttggtcaa aaaccgtagt acaacccaaa aagtttcttc
     1081 atttcagagg agtgaacgcg gattatagtc attggatgtc atattggatc gcgttgggaa
     1141 tcgacaaaaa aacacaaatg aactatcata tgaaaccgtt ttgcaaagat acttatgcaa
     1201 ctgaaggctc cttaggtagg ttagtctttt ctaggcacag aagagtgaga aaattctaaa
     1261 tttctgagca gtctgctttt tgttttcctt gagtttttac ttaaagctct taaaagaaat
     1321 ctaggcgtga agttcgagcc ttgtaccata ccacaacagc attccaaatg ttacagaagc
     1381 gaaacaaaca tttactgata aaatcaggtc agctgttgag gaaattatct ggaagtccgc
     1441 tgaatattgt gatattctta gcgagaagtg gacaggaatt catgtgtcgg ccgaccaact
     1501 gaaaggtcaa agaaataagc aagaagatcg ttttgtggct tatccaaatg gacaatacat
     1561 gaatcgtgga caggttagtg cgaatcgggg actcaagatt tactgaaata gtgaagagaa
     1621 aacaaaagaa aactatattt tcaaaaaaaa tgagaactct aataaacaga atgaaaaaca
     1681 ttcaaagcta cagtagtatt tccagctgga gtttccagag ccaaaaaaat gcgagtatta
     1741 ctgtagtttt gaaattggtt tctcacttta cgtacgattt tttgattttt ttttcagact
     1801 cttcatatga aaaaaaatca tgttttctcc tttacaagat ttttttgatc tcaaaacatt
     1861 tccagagtga catttcactt cttgcggtgt tcgatgggca tggcggacac gagtgctctc
     1921 aatatgcagc tgctcatttc tgggaagcat ggtccgatgc tcaacatcat cattcacaag
     1981 atatgaaact tgacgaactc ctagaaaagg ctctagaaac attggacgaa agaatgacag
     2041 tcagaagtgt tcgagaatct tggaaaggtg gaaccactgc tgtctgctgt gctgttgatt
     2101 tgaacactaa tcaaatcgca tttgcctggc ttggagattc accagggtaa tcaatttttt
     2161 tttagttttt ggaactttac gtcccgaaaa attattcctt tatcacctaa ttcctacagt
     2221 aacccaagct ccgaattaaa taaagttaaa gcgtggtata cacataaaaa taagaaaaaa
     2281 ttgttcatga aatccatttt tccagttaca tcatgtcaaa cttggagttc cgcaaattca
     2341 ctactgaaca ctccccgtct gacccggagg aatgtcgacg agtcgaagaa gtcggtggcc
     2401 agatttttgt gatcggtggt gagctccgtg tgaatggagt actcaacctg acgcgagcac
     2461 taggagacgt acctggaaga ccaatgatat ccaacaaacc tgatacctta ctgaagacga
     2521 tcgaacctgc ggattatctt gttttgttgg cctgtgacgg gatttctgac gtcttcaaca
     2581 ctagtgattt gtacaatttg gttcaggctt ttgtcaatga atatgacgta gaaggtatca
     2641 aactgatcgt ttttcacatc acaaaattct tgaattttcc agattatcac gaacttgcac
     2701 gctacatttg caatcaagca gtttcagctg gaagtgctga caatgtgaca gtagttatag
     2761 gtttcctccg tccaccagaa gacgtttggc gtgtaatgaa aacagactcg gatgatgaag
     2821 agagcgagct cgaggaagaa gatgacaatg aatagtttat tgcaagtttt ccaaaacttt
     2881 tccaatttcc ctgggtattg attagcatcc atatcttacg gcgattatat caattgtaac
     2941 attatttctg tttctccccc cacctctcaa attttcaaat gacccttttt cttttcgtct
     3001 acctgtatcg ttttccattc atctcccccc ctccactgtg gtatatcatt ttgtcattag
     3061 aaagtattat tttgattttc attggcagta gaagacaaca ggatacagaa gaggttttca
     3121 cag
//

Sequence features should be

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